1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataatagttttatatttttccatccacataccatcctaccttttttagatgttcacaaggaatgccatttgtgtaatttataagctgcatttacattttaataatccattgcatttgcatgtatcttccatcacaagttcagttgagctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAAAAAGTTAAGGATGACAGTAAAACTCTAC
species | Glycine max |
transcript | GLYMA12G06680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTEST: gi|19346057|gb|BM890937.1|BM890937
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTEST: gi|15815916|gb|BI788191.1|BI788191
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
atcttccatcacaagttcagttgagctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAAAAAGTTAAGGATGACAGTAAAACTCTAC
tattttttacaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatagttttatatttttccatccacataccatcctaccttttttagatgttcacaaggaatgccatttgtgtaatttataagctgcatttacattttaataatccattgcatttgcatgtatcttccatcacaagttcagttgagctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAAAAAGTTAAGGATGACAGTAAAACTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG