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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacaatataaggtgctggtggcattagctgatatgtataatatttgactctgtaattttctgaatgtcttatcatttttctttttttctttccattatgtattcctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA

Basic information

species Glycine max
transcript GLYMA12G06450.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06450.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 4
gtatggacaatataaggtgctggtggcattagctgatatgtataatatttgactctg-taattttctgaatgtctta---tcatttttctttttttctttccattatgtattcctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA
                     |       | ||   |   |  ||  | | |  ||  |     | ||| ||  ||    |||||     |        |  | | | | |     |  |||| || |||||||||||||  || || |||||  | |||||| | |||||||||||| || | ||||| ||||| |||||||||||||| || |||||||
---------------------gcccatgcttgcaagttcatcaaagttctaatcctaattgaactgtgactgatttgagttcattggggatggcaataataaaatgtttctaatcatgcagGCAATAGAAGTTGTTGATCCAGACCAAAAGATTAAAATGGTTGAGGAGCTTGATGGTCATATCATGCGATGTGTGCGTGATCAGAATGGAAACCATGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaatgtcttatcatttttctttttttctttccattatgtattcctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA
              tcatttttcttttttt  CT-rich tract
           ttatcatttttctttt  TA-rich tract