1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttctcttcactgcttatattacttttataatgtacctgagatcgtttgtcatataagaataccttctacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATATTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
species | Glycine max |
transcript | GLYMA12G06430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGTGATACAG AGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATEST: gi|105633593|gb|DW246956.1|DW246956
genomic: GCCGGGTGATACAGgtaagttctc ... tacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
EST: TCAAGTTGTGACACTCTCAACCCCATCCATATGGTTGCCGGGTGATACAG AGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
genomic: TCAAGTTGTGACACTCTCAA-CCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
cttttataatgtacctgagatcgtttgtcatataagaataccttctacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATATTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
taccttct CT-rich tract
atataagaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctcttcactgcttatattacttttataatgtacctgagatcgtttgtcatataagaataccttctacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATATTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA