1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatatagcctttttgttataattgttttacttgggactaaaggattttttttgttaattacacccctttttctggtttatcgaattccctaatgtgtgtttgaaatttggcagGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGGTCTTCTGAGTGGAAAGCATATCCCACCCAGTCAT
species | Glycine max |
transcript | GLYMA12G06200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCTATAGTACAAATTTAGCCTTCACTCCNCCAGAGTACTTGAGGACAG GAAGGATCCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTEST: gi|6566897|gb|AW234529.1|AW234529
genomic: AAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGgtaatatagc ... aatttggcagGAAGGATC-ACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTT
EST: AAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAG GAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGEST: gi|18730560|gb|BM525946.1|BM525946
genomic: AAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGgtaatatagc ... aatttggcagGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTG
EST: AAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAG GAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTG
genomic: AAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGgtaatatagc ... aatttggcagGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTG
tacacccctttttctggtttatcgaattccctaatgtgtgtttgaaatttggcagGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGGTCTTCTGAGTGGAAAGCATATCCCACCCAGTCAT
ccctaat putative branch site (score: 3)
tttgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatagcctttttgttataattgttttacttgggactaaaggattttttttgttaattacacccctttttctggtttatcgaattccctaatgtgtgtttgaaatttggcagGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGGTCTTCTGAGTGGAAAGCATATCCCACCCAGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA