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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttatgactctactttttcaatgcttctcagacactggttcaaaggaaagttatattgatttcattttattttacagATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAG

Basic information

species Glycine max
transcript GLYMA12G06010.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------------------------gtatgttttttatgactctactttttcaatgcttctcagacactggttcaaaggaaagttatattgatttcattttattttacagATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAG
                                                            | |  ||| | || | | |||||  | |         | | ||||||| |  | | | | |   | ||  | |||    || ||||| || |||||||||| |||| |||| || ||||| |||||||| |||||||||||||| ||| ||||||||||
gtatctttctatacatatatagtttcttttatatacaaattgcaatttagatattaacaaggagctttctcatcagtgtacttaattataaaag--aaaaaactggtt-agggcacaatgac--taatgcc-tttgtcgttgcagATCAGTAACTATGAGAGGGAACTGGAGGAGATGAAGCACATGACCAGACAAGAATTTGTGGCCTCCATTAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045627|gb|CA783156.1|CA783156
EST:     ATTTAGCTGCTCTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA                         ATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAA
genomic: ATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCAgtatgttttt ... tattttacagATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttctcagacactggttcaaaggaaagttatattgatttcattttattttacagATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAG
                               tattgat  putative branch site (score: 3)
                                     tttcattttatttt  CT-rich tract
                        aaagttatattgattt  TA-rich tract