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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcttacctgctcattgctaactttcatttatactattgacaataaccttttaatgaattggtccctgctgtttgttttgttgtgaagGAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGTATTTGAGAGAATTTTATTTCGTG

Basic information

species Glycine max
transcript GLYMA12G04330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcttcttacctgctcattgctaactttcat-ttatactattgacaataaccttttaatgaatt---ggtccctgctgtttgttttgttgtgaagGAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGTATTTGAGAGAATTTTATTTCGTG
||| |      | |  ||  ||  ||   ||  | | |||||||   |   ||||||||| |  |     |  | || ||   ||  |  ||||  ||||| |||| | ||||   ||||||||||| |||||||||||| | || || |||||||| ||||  || || |||| |||||| || ||| |||||||||
gtacggactgcagccactgttttgtattcttagtatcatactatcatctgaaaccttttatttgacctcagaacacttcttcctggct-attgtatagGAAATGTCAACTGATCTGTCAAAGCAAGTAAAGTTGGGGTTTCTTGCTGGCCTTGTTCCTAGGGTGAAATCTATGGCATTTGAAAGGATTCTATTTCGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193476826|gb|FK440387.1|FK440387
EST:     CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CATGCCATCTGAGTGGTGAATCTATGGAAACACCTTTATTACAGGACCAAgtaagcttct ... tgttgtgaagGAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGT
EST: gi|193465178|gb|FK431061.1|FK431061
EST:     TTATTACAGGACCAA                         GAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGT
genomic: TTATTACAGGACCAAgtaagcttct ... tgttgtgaagGAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgacaataaccttttaatgaattggtccctgctgtttgttttgttgtgaagGAATTGTCTATTGATTCATCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGTATTTGAGAGAATTTTATTTCGTG
                                      tttgtttt  CT-rich tract
        aataaccttttaat  TA-rich tract