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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttgctatttgccactacttcctttatatatacaattaattaattgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG

Basic information

species Glycine max
transcript GLYMA12G03660.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03660.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 3'ss of exon 6
gtgcttgctatttgccactacttcctttatatatacaattaattaat-tgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtgg-tctgatttactgtattttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG
                           ||| | |   |||   |  | || |||   || || || |   || | |||||||| ||   | | || | |  ||||    |   | || |   ||   | |||      |  | | |||  ||||||| ||   || | ||||||| ||||| ||||||||||| || || ||||| | |||||||||||||||||||||||| || |||
--------------------------gtatttttgatattgccttgtgtgatttaagatgatcttgtgagtactacactgtttattgcatcatccttgtgcttgt-atcccttggattgtattgcaatcactgcc--caattaaatgggcctgatttcctactttctttgaagGGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208044920|gb|GD840154.1|GD840154
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298171505|gb|HO016537.1|HO016537
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|192329145|gb|FK021132.1|FK021132
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58014286|gb|CX701028.1|CX701028
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58020948|gb|CX707690.1|CX707690
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|151401174|gb|EV270988.1|EV270988
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|151405308|gb|EV275122.1|EV275122
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|18039985|gb|BM308279.1|BM308279
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGATAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|308222701|gb|HO760611.1|HO760611
EST:     GGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58021197|gb|CX707939.1|CX707939
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298170161|gb|HO018785.1|HO018785
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTG
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTG
EST: gi|192329144|gb|FK021131.1|FK021131
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298172850|gb|HO019834.1|HO019834
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG
                                   atttactgtatttt  TA-rich tract