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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgttatgtctatctgtgatgaagtttcatattgatattgcaacacttgaactaactgtgtatacttgctactttgtacatgaaattttcaaaatttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------gtaattatg----ttatgtctatctgtgatgaa--gtttcatattgatattgcaacacttgaactaactgtgtatacttgctactttgtacatgaaattttcaaaatttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA
                             |||  || |     | ||| | |  | | |  |  | ||   |||   |||| |||| |||         |   | ||   |  || | ||||     || |     | |||||||| ||||||||||| ||||||||||| ||||||||||| || || || ||||||||| | ||||||||||| ||||||||||| ||||| || ||  
gtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcattt-cattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901007|gb|BE609973.1|BE609973
EST:     CTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACG                         GTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGA
genomic: CTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGgtaattatgt ... aaaatttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgaactaactgtgtatacttgctactttgtacatgaaattttcaaaatttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA
    aactaac  putative branch site (score: 1)
                               tacatgaaattttcaa  TA-rich tract