1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attctttttgaataaagtactctccttcaaacaatatatatagttttgtcttatcctcaagtctagttataattgttaatgttttccttttctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAG
species | Glycine max |
transcript | GLYMA12G02110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|58017541|gb|CX704283.1|CX704283
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|58024666|gb|CX711407.1|CX711407
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|58017601|gb|CX704343.1|CX704343
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|151403387|gb|EV273197.1|EV273197
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|192330787|gb|FK022358.1|FK022358
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATEST: gi|192310499|gb|FG999200.1|FG999200
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
ttgtcttatcctcaagtctagttataattgttaatgttttccttttctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAG
tgttaat putative branch site (score: 3)
tgttttccttttcttt CT-rich tract
tagttataattgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctttttgaataaagtactctccttcaaacaatatatatagttttgtcttatcctcaagtctagttataattgttaatgttttccttttctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - -ctccttc