1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcagagtttcttgaaatgtgttttgtagtattatttttggcctggactaggaacttcttgtcgacctgattgttttaatttgatactttttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGAATCTGATTAAGTTTGCCATCATTACATGTCGAAAGCCTGA
species | Glycine max |
transcript | GLYMA12G01680.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|151406224|gb|EV276039.1|EV276039
genomic: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcaa ... tttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAGCCATEST: gi|58023365|gb|CX710106.1|CX710106
genomic: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcaa ... tttggtccagGACTTAAAGCCAT
EST: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|208325898|gb|GE124550.1|GE124550
genomic: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcaa ... tttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcaa ... tttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
ggactaggaacttcttgtcgacctgattgttttaatttgatactttttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGAATCTGATTAAGTTTGCCATCATTACATGTCGAAAGCCTGA
tacttttt CT-rich tract
attgttttaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagagtttcttgaaatgtgttttgtagtattatttttggcctggactaggaacttcttgtcgacctgattgttttaatttgatactttttggtccagGACTTAAAGCCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGAATCTGATTAAGTTTGCCATCATTACATGTCGAAAGCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-tgcagag
- - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - cctggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatt