1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaactcggccttttgtagtggatagtgatctcctttggttgctatggaggatatgctttctaccactgctattaaaatactgatttaaaattttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAATAATGATATTGCACCTTATGCGTTTTGGCTACGGAAGCCAGGGTAGCA
species | Glycine max |
transcript | GLYMA12G01430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGAACATCACTCACTGCAAAG GCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAEST: gi|12773894|gb|BG238821.1|BG238821
genomic: CGAACATCACTCACTGCAAAGgtatataacc ... attttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAA
EST: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTTCAAAG GCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTGCTAAAEST: gi|4300974|gb|AI443124.1|AI443124
genomic: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGgtatataacc ... attttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAA
EST: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAG GCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAEST: gi|10236673|gb|BE805561.1|BE805561
genomic: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGgtatataacc ... attttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAA
EST: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAG GCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAA
genomic: TTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGgtatataacc ... attttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAA
tggaggatatgctttctaccactgctattaaaatactgatttaaaattttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAATAATGATATTGCACCTTATGCGTTTTGGCTACGGAAGCCAGGGTAGCA
tactgat putative branch site (score: 2)
ttttttc putative PPT
tattaaaatactgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaactcggccttttgtagtggatagtgatctcctttggttgctatggaggatatgctttctaccactgctattaaaatactgatttaaaattttttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAATAATGATATTGCACCTTATGCGTTTTGGCTACGGAAGCCAGGGTAGCA
- - ctcggcc
- - - - - - - -gtagtgg
- - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - -tggagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgcta