1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgtatagactttaatgagaataaatttcttcagatttgaacagaagtttttaatagtcacacacttcatttcaattttctccctaattatgcctattttcttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
species | Glycine max |
transcript | GLYMA12G01270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAG ACTACTAAAACCTGGAGGGACCTATATTTTGEST: gi|298172641|gb|HO019681.1|HO019681
genomic: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAGgttgtataga ... ttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
EST: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAG ACTACTAAAACCTGGAGGGACCTATATTTTGEST: gi|15287181|gb|BI471072.1|BI471072
genomic: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAGgttgtataga ... ttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
EST: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAG ACTACTAAAACCTGGAAGGACCTATATTTTGEST: gi|207777459|gb|GD750542.1|GD750542
genomic: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAGgttgtataga ... ttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
EST: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAG ACTACTAAAACCTGGAGGGACCTATATTTTG
genomic: GGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGTAGgttgtataga ... ttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
gtcacacacttcatttcaattttctccctaattatgcctattttcttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
ccctaat putative branch site (score: 3)
tgcctattttcttctt putative PPT
ttcatttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtatagactttaatgagaataaatttcttcagatttgaacagaagtttttaatagtcacacacttcatttcaattttctccctaattatgcctattttcttctttgcagACTACTAAAACCTGGAGGGACCTATATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG