1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgaatatttgattagtgttagttcactgctgctaaaatgaatctcagtgcattccatttattctttcctatcatgactcaattctgttggatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAG
species | Glycine max |
transcript | GLYMA12G00600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACATCTTATGCAGATGTTATTGAAAGGTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|192313769|gb|FK007641.1|FK007641
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|18848964|gb|BM568074.1|BM568074
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|31457481|gb|CD399509.1|CD399509
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|7924908|gb|AW830934.1|AW830934
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|19269603|gb|BM885859.1|BM885859
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|33389909|gb|CA853116.1|CA853116
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGEST: gi|192313768|gb|FK007640.1|FK007640
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGG
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|22525484|gb|BU084295.1|BU084295
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACT--G --AGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|33389270|gb|CA852477.1|CA852477
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|193623839|gb|FK575133.1|FK575133
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: CATCTTATGCAGTATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATEST: gi|192307757|gb|FK001701.1|FK001701
genomic: CATCTTATGCAG-ATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
cagtgcattccatttattctttcctatcatgactcaattctgttggatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAG
atttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatatttgattagtgttagttcactgctgctaaaatgaatctcagtgcattccatttattctttcctatcatgactcaattctgttggatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - cactgct
- - - - - - - - - - - - - - - - - aaaatgaa
- - - - - - - - - - - - - - - - - - - - - - tcagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg