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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgtaaatgaagtaatatctcattttaatttgtgtgtgtggcagAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT

Basic information

species Glycine max
transcript GLYMA12G00530.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00530.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 6
gtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgt-aaatgaa--------gtaatatctcattttaatttgtgtgt-gtggcagAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT
|||||         |  ||  || |    |  | |  |     ||| |  |||| |||  | |||         ||| | |    | |   | | | ||| || |||||||||| ||||| || ||| | ||| |||||||||| || || || || |||||||| ||  | || ||||| |||||||| || |||||||||||||| 
gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggcctgtactgtactgtgtctctgtatctgttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC

upper sequence: GLYMA12G00530.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0089g01040.t01 (Vitis vinifera), 3'ss of exon 5
--gtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgtaaatgaagtaat--atctcattttaatttgtgtgtgtggcagAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT
   | |  ||  |  |||  || | ||   |||| ||     | |  ||| |    ||  |||| ||  ||   |  | |    |||     |||  |||||||| || || ||| | ||| | |||  |||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||
aatttaaattaattgttatata-ttataatttgtagatatccacaa-aatatgaaattaaaaattaatgaagcgaaatgacgaaaatgaccttgttgggcagAGGGGTGAAATATTACGAGCCAGAGTTCTGGAAATTTGGAGAGGAAGGGAACAAGTATTTCAGGCACGCCACTGGTCAAATCTATGCAATTTCGAAGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgttgttttgtaaatgaagtaatatctcattttaatttgtgtgtgtggcagAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT
              taaatgaagtaatatc  TA-rich tract