Sequence
atgc intronic sequence ATGC exonic sequence...tattgatcattcatctcttacaagtttatctttcatattttttgcatttgtataagtttatcatgttcgtgttatgtcttatgtgaatccaaaactgcagCCTTTATTTCGCAAGATTGCTGCAGCCTTGCCAGGGATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTTGATGTAAATTTAAAACCCACCGTGA
Basic information
species | Glycine max |
transcript | GLYMA11G38110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G38110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 3'ss of exon 5
tattgatcattcatctct-tacaagtttatctttcatattttttgcatttgtataagtttatcatgttcgtgttatgtcttatgtgaatccaaaactgcagCCTTTATTTCGCAAGATTGCTGCAGCCTTGCCAGGGATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTTGATGTAAATTTAAAACCCACCGTGA
| || || || | | || || || | | || |||| | | | | || | || | ||| ||| | ||| ||||||| | |||||||||||||| ||||| || ||||| ||||||||||||||||| || ||||| || || ||||||||||| ||| |||| | | |
-gtgagagatgcaactatgctctcattactcgtttaagatcttgagatttcttggaataacgcttggctttcttgt-tctggtgttt-tggaaacttgcagCCACTTTTTCGCAAGATTGCAGCAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAACAAGAGGATATGGTTGATGTGAATCTAAAGACTTCGAGCA
upper sequence: GLYMA11G38110.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 5
tattgatcattcatctcttacaagtttatctttcatattttttgcatttgtataagtttatcatgttcgtgt-tatgtcttatgtgaatccaaaactgcagCCTTTATTTCGCAAGATTGCTGCAGCCTTGCCAGGGATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTTGATGTAAATTTAAAACCCACCGTGA
| || || ||| || | | | | || | |||| | || | | | | | |||| || ||||| |||||||| |||| || ||||||||| | || |||||||| |||||||| ||||| || |||||||||||||||||||| || || || | || |||| || |
-accttgcacacacctcatattactaaaaatgagctaagctcattggttgtttcttgcagctctgataacctctgttttcaatgtaaaatcaaaattgcagCCTCTATTCCGGAAGATTGCTTCTGCTTTGCCAGGAATGGAAACCCTTTCCTCCACAAAACAGGAAGACATGGTCGACGTGAACCTGAAGCCCAGTGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgtataagtttatcatgttcgtgttatgtcttatgtgaatccaaaactgcagCCTTTATTTCGCAAGATTGCTGCAGCCTTGCCAGGGATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTTGATGTAAATTTAAAACCCACCGTGA
tataagtttatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattgatcattcatctcttacaagtttatctttcatattttttgcatttgtataagtttatcatgttcgtgttatgtcttatgtgaatccaaaactgcagCCTTTATTTCGCAAGATTGCTGCAGCCTTGCCAGGGATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTTGATGTAAATTTAAAACCCACCGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -cattcat
- - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg