1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgttcactttcatttggttaaaaatgtgtattttctgatattcactatcatttggtcaatgttgctttaactattttggatgttcactttctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
species | Glycine max |
transcript | GLYMA11G38040.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAA AGAACCTGGTGCAGAACGGAAATTTAAAGAACTTAGTAATGCATATGAGEST: gi|209711040|gb|BW681350.1|BW681350
genomic: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAAgtatgttctt ... tctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
EST: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAA AGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAGEST: gi|213599308|gb|DB962317.1|DB962317
genomic: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAAgtatgttctt ... tctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
EST: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAA AGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
genomic: CTTATCGGAAGCTTGCCCGGAGTTGTCATCCTGATGTGAACAAgtatgttctt ... tctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
ctatcatttggtcaatgttgctttaactattttggatgttcactttctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
ctttaac putative branch site (score: 3)
ttcactttct putative PPT
tttaactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcactttcatttggttaaaaatgtgtattttctgatattcactatcatttggtcaatgttgctttaactattttggatgttcactttctgctgcagAGAACCTGGTGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -cactttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt