1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttggaaagctcctgtgcttgagctctctctctctttctctaatcattctcaagtagtcatattatgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAG
species | Glycine max |
transcript | GLYMA11G37320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG GAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGEST: gi|192303937|gb|FG995251.1|FG995251
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG GAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGEST: gi|192303938|gb|FG995252.1|FG995252
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG GAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGEST: gi|151393351|gb|EV263226.1|EV263226
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG GAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGEST: gi|209700088|gb|BW652960.1|BW652960
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG GAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
tgagctctctctctctttctctaatcattctcaagtagtcatattatgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAG
ctctaat putative branch site (score: 3)
tcatattatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggaaagctcctgtgcttgagctctctctctctttctctaatcattctcaagtagtcatattatgatttcagGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG