1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatttcatgccattcaatgtaaaaactggtcttttttttcttatgttttgtttttattttgtttgattcaaaatttctatatgaaaattcttaattttatccataccattgtgtaacctgtttctcctgttttttgtttttttttaaattcttcttacctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAG
species | Glycine max |
transcript | GLYMA11G34980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|208217759|gb|GE016057.1|GE016057
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|6071648|gb|AW101035.1|AW101035
genomic: GCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTTEST: gi|193562849|gb|FK518652.1|FK518652
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT-
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|58016090|gb|CX702832.1|CX702832
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|15662128|gb|BI699499.1|BI699499
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|12774685|gb|BG239612.1|BG239612
genomic: GCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|193630911|gb|FK585066.1|FK585066
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|207802987|gb|GD773500.1|GD773500
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: CATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|254323157|gb|GR835765.1|GR835765
genomic: CATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|58017218|gb|CX703960.1|CX703960
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|5058103|gb|AI736579.1|AI736579
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|58017413|gb|CX704155.1|CX704155
genomic: GCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|58023179|gb|CX709920.1|CX709920
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGEST: gi|208056626|gb|GD850343.1|GD850343
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGAEST: gi|151411180|gb|EV280991.1|EV280991
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGA
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTCGAGGAAATAG GAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGgtatttcatg ... ctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTG
taacctgtttctcctgttttttgtttttttttaaattcttcttacctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAG
ttcttac putative branch site (score: 2)
ttcttcttacctttgt CT-rich tract
tgttttttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcatgccattcaatgtaaaaactggtcttttttttcttatgttttgtttttattttgtttgattcaaaatttctatatgaaaattcttaattttatccataccattgtgtaacctgtttctcctgttttttgtttttttttaaattcttcttacctttgtgcagGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG