1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataaatagagacaaataaagagatagcttaacttccattttttcaataattcattaccgttgtcaaagcatcattaatgcatttgcagtcttgtcttgctctaacctttgcattatatattctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTTGGTGTTCTTCTTCAGGGGAAAAAAGTTAGAGATGACAATAGAACACTTG
species | Glycine max |
transcript | GLYMA11G34050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGCTTTATATTGAGGGTCCTGAAACTTCAACTGTTGGTTCACCTAA-G AAGACTATCGTGGAGGCAGTGATGGCTATACTTTGAGGTGGTGCACATGTEST: gi|9258784|gb|BE346931.1|BE346931
genomic: AGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCAC-TAAAGgtataaatag ... ttctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGT
EST: CAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAG AGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTTEST: gi|192323863|gb|FK018614.1|FK018614
genomic: CAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAGgtataaatag ... ttctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTT
EST: CAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAG AGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTT
genomic: CAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAGgtataaatag ... ttctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTT
taatgcatttgcagtcttgtcttgctctaacctttgcattatatattctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTTGGTGTTCTTCTTCAGGGGAAAAAAGTTAGAGATGACAATAGAACACTTG
ctctaac putative branch site (score: 2)
tattcttt putative PPT
attatatattctttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaatagagacaaataaagagatagcttaacttccattttttcaataattcattaccgttgtcaaagcatcattaatgcatttgcagtcttgtcttgctctaacctttgcattatatattctttgtagAGGACTATCGTGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTTGGTGTTCTTCTTCAGGGGAAAAAAGTTAGAGATGACAATAGAACACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG