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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttactagtttacattttcagagaccaaaatggttatttatcttatccttcttttgtttaagttgctgtttgctatagctaataatgtagaaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGATGTCATTGAAGGTTGGCGTCCTAAAGTGGAAGGCTAATATTCACTGATCA

Basic information

species Glycine max
transcript GLYMA11G33700.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296135|gb|FG989495.1|FG989495
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|31470635|gb|CD412663.1|CD412663
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|151403447|gb|EV273257.1|EV273257
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAA                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAG-AT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|192299879|gb|FG990087.1|FG990087
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAA                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|120534693|gb|EH262826.1|EH262826
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|208193623|gb|GD992970.1|GD992970
EST:     ATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: ATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|120534677|gb|EH262810.1|EH262810
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTTTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCCCAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|209722400|gb|BW665860.1|BW665860
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|209708273|gb|BW678645.1|BW678645
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|20813171|gb|BQ297649.1|BQ297649
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|5677088|gb|AI938218.1|AI938218
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
EST: gi|209705735|gb|BW661403.1|BW661403
EST:     AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAG                         GTCATTTTCTCGAGGGGATCGTTCGTTAAAACAAGTGCACAACCACAGGAT
genomic: AGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGgtatgttcaa ... aaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttcttttgtttaagttgctgtttgctatagctaataatgtagaaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGATGTCATTGAAGGTTGGCGTCCTAAAGTGGAAGGCTAATATTCACTGATCA
                               agctaat  putative branch site (score: 3)
      ttttgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttactagtttacattttcagagaccaaaatggttatttatcttatccttcttttgtttaagttgctgtttgctatagctaataatgtagaaccgtacagGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGATGTCATTGAAGGTTGGCGTCCTAAAGTGGAAGGCTAATATTCACTGATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - -accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtag