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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcagGCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGACATTGTGTAGTCATGTCACTCGTCCAGGGTTACCCTCT

Basic information

species Glycine max
transcript GLYMA11G33320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 5
gttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcagGCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGACATTGTGTAGTCATGTCACTCGTCCAGGGTTACCCTCT
  ||  ||     || || |    ||   || || ||| ||| |       |||||  |||   |   ||| ||  |   | |   |||||||||||||||||||||||  |||||| |||||||||||||||||  | ||    |||||||||||||| || |||||||| ||||| ||||| || ||
-gttcattgctgttttctattgcatt---tcaatttaattgtctttgctgtttgttccattagttgaaattagcctgatgcttcaactttgcttgagcagGCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730095|gb|BM525678.1|BM525678
EST:     GGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAG                         GCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGA
genomic: GGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgtttt ... gcttgagcagGCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcagGCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGACATTGTGTAGTCATGTCACTCGTCCAGGGTTACCCTCT
                  gtttgat  putative branch site (score: 5)
                                         ctttgctt  putative PPT
     attgttatattttgtt  TA-rich tract