1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgactaaaaatatattaacacttgctttctttaaacaccacacaccaatgtgggttaagtaatgccctatcatttattcacttgtttgatcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACAAGCAGAAACTACCTTGGTACCGTGGCCAG
species | Glycine max |
transcript | GLYMA11G27190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTG ATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACEST: gi|207841743|gb|GD817155.1|GD817155
genomic: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGgtaatttcac ... tcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
EST: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTG ATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACEST: gi|58020974|gb|CX707716.1|CX707716
genomic: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGgtaatttcac ... tcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
EST: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTG ATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACEST: gi|151411340|gb|EV281151.1|EV281151
genomic: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGgtaatttcac ... tcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
EST: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTG ATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACEST: gi|58017748|gb|CX704490.1|CX704490
genomic: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGgtaatttcac ... tcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
EST: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTG ATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
genomic: TCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGgtaatttcac ... tcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTAC
ccaatgtgggttaagtaatgccctatcatttattcacttgtttgatcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACAAGCAGAAACTACCTTGGTACCGTGGCCAG
gtttgat putative branch site (score: 5)
tatcatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgactaaaaatatattaacacttgctttctttaaacaccacacaccaatgtgggttaagtaatgccctatcatttattcacttgtttgatcatgtgtagATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACAAGCAGAAACTACCTTGGTACCGTGGCCAG
- - - aaaaata
- - - - - - - - - -cacttgc
- - - - - - - - - - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - - - - - - -ccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgt