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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatacaagtgaagagtttctgcagttatctttctaacatgaaaattgtaatctagaataagtctctattcatcttgcagGAGAAGTGTCTCTAACCTCCTTGGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGG

Basic information

species Glycine max
transcript GLYMA11G19750.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19750.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtaaa--tacaagtgaagagtttctgcagttatctttctaacatgaaaattgtaatctagaataagt-ctctattcatcttgcagGAGAAGTGTCTCTAACCTCCTTGGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGG
||| | ||   ||  | | |||   || |  | ||    || | | |||    ||  | | |  |||  |   | | ||||| ||||||||||||||||||||| || ||| | ||  |||||||||| |  || || |  |||||||| |||||||| ||||||||||  ||||      ||||||||
gtatgaaaccttattattaaaggtcttatatatttggtcttttgaaatg----ttccagtattcaatgggaatttttttcatgttgcagGAGAAGTGTCTCTAATCTTCTTCGGAGTGGTTTCCGTGAAAACCTGGACCGATTGATACAATCATATGTGGAAAGGCAAGTCCATGACCCTGTTGACTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctttctaacatgaaaattgtaatctagaataagtctctattcatcttgcagGAGAAGTGTCTCTAACCTCCTTGGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGG
      ttctaac  putative branch site (score: 1)
                                     tctctattcatctt  putative PPT
             atgaaaattgtaat  TA-rich tract