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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttctattgtgaatttaattatttgaaatgtcattaaagtctatataaaaggatttacaattaatattttcaatggcctaaaaagttgggtaacttgactgttgcccgtaattgatttagGAAACTGTCGATATGGTGTAGACCTTGCCAAGCAGTTAGCAGCTTCTTTGCTCAGTGTTCTTGCTAGTTGTGGGAGTGTTAGGATATCCTTTTCGGAGAG

Basic information

species Glycine max
transcript GLYMA11G18750.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18750.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 3'ss of exon 5
gtagtttctattgtgaatttaattatttgaaatg--tcattaaagtctatataaaaggatttacaattaatattttcaatggcctaaaaagttgggtaacttgactgttgcccgtaattgatttagGAAACTGTCGATATGGTGTAGACCTTGCCAAGCAGTTAGCAGCTTCTTTGCTCAGTGTTCTTGCTAGTTGTGGGAGTGTTAGGATATCCTTTTCGGAGAG
                   ||||||| ||   |   ||||| | |    |  |       || ||| ||  ||| || ||   |  |  |||   ||  |       ||  ||        ||||||  |||||||||||||||| || ||||||||||||||| |||| | | |||   | |||||||  || ||||| ||||| || ||||| || || || ||
------------------ataattatctgtcttccttcattcatgctgtttcaccttatattccaagtacaattgtctatctacatatgagtcatgtgccgcacaaattctcc--------tttagGTCACTGTCGATATGGTGTGGATCTTGCCAAGCAGTTATCAGCCTGTCTGCATGGGGTTCTTGTGAGCTGTGGTAGTGTGAGAATATCTTTCTCAGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcaatggcctaaaaagttgggtaacttgactgttgcccgtaattgatttagGAAACTGTCGATATGGTGTAGACCTTGCCAAGCAGTTAGCAGCTTCTTTGCTCAGTGTTCTTGCTAGTTGTGGGAGTGTTAGGATATCCTTTTCGGAGAG
                                           taattgattta  TA-rich tract