Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtactaattacacagattttgaattgattccgttgctatttatttaagattatatatacttttttattatgttactgttattttatatgtgacttaaatacatgctgatatgatttttggaattcaatattaccttactgtgtggttatgcatgtagACCATGGCATGGATACTAGACGAGTATTCCAAATTCCACGGTTACTCTCCTGTAGTAGTGACTGGAAAACCTATA

Basic information

species Glycine max
transcript GLYMA11G16320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 5
gtcggtactaattacacagattttgaattgattccgttgctatttatttaagattatatatacttttttattatgttactgttattttatatgtgacttaaatacatgctgatatgatttttggaattcaatattaccttactgtgtggttatgcatgtagACCATGGCATGGATACTAGACGAGTATTCCAAATTCCACGGTTACTCTCCTGTAGTAGTGACTGGAAAACCTATA
                                                 |  |  | | | |        ||||| ||   ||  |||  ||||   | ||  | ||  |||  | | | |  |  ||   | |    ||  ||||| |||   ||    ||||||||||||||||||||| ||||| || ||||| || || ||||| ||||  || ||||||||||| ||||| 
-------------------------------------------------agaaggaaaaaaaaaaaa--gttatggtatctttggtttgaatgt---tcaaccatat-ttgaactaactgt--ggcttttgtttctggttcttgtgttgttgaaca----gACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgatatgatttttggaattcaatattaccttactgtgtggttatgcatgtagACCATGGCATGGATACTAGACGAGTATTCCAAATTCCACGGTTACTCTCCTGTAGTAGTGACTGGAAAACCTATA
                             accttac  putative branch site (score: 3)
                  aattcaatatta  TA-rich tract