1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagaataaggcactattcagtatttggcataatttcatgcatcatttttcctttttttagtgtagcaaattttgtattagtctcatatttttgctgaagatcatcatttggaatgagcacacagaatgacatcaaatctcttatttattatgttcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAG
species | Glycine max |
transcript | GLYMA11G15470.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAEST: gi|254348098|gb|GR851777.1|GR851777
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAA
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAEST: gi|11687562|gb|BF595238.1|BF595238
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAA
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTGTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAEST: gi|10232648|gb|BE801536.1|BE801536
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAA
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGEST: gi|208321404|gb|GE118183.1|GE118183
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTG
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAEST: gi|207843904|gb|GD816035.1|GD816035
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAA
EST: AATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAEST: gi|193442955|gb|FK407847.1|FK407847
genomic: AATTCTGAATCTGTTTCACTTAGTCCTGGAGACAG-AACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAA
EST: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATT TGTAAGAGTTTTCCAGGAGCTCTTGCAAATA
genomic: CTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTgtaagaataa ... tcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATA
tggaatgagcacacagaatgacatcaaatctcttatttattatgttcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAG
tgttctttt CT-rich tract
atcaaatctcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaataaggcactattcagtatttggcataatttcatgcatcatttttcctttttttagtgtagcaaattttgtattagtctcatatttttgctgaagatcatcatttggaatgagcacacagaatgacatcaaatctcttatttattatgttcttttgcagTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA