1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttttttctttttcttgccatcagttcataattaaccagtttcttagcttatgggtttcttgctttagtttaatggcaatcaatggtctatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCAAATTACAGTATTGGTGGATTGTGAAGGGTTATCTCCATTGAGAATTCC
species | Glycine max |
transcript | GLYMA11G15000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTA TATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCEST: gi|58018414|gb|CX705156.1|CX705156
genomic: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTAgtatgttttt ... tatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
EST: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTA TATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCEST: gi|151412707|gb|EV282519.1|EV282519
genomic: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTAgtatgttttt ... tatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
EST: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTA TATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCEST: gi|11274585|gb|BF324927.1|BF324927
genomic: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTAgtatgttttt ... tatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
EST: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTT TATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCEST: gi|24135869|gb|BU926379.1|BU926379
genomic: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTAgtatgttttt ... tatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
EST: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTA TATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
genomic: CTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTAgtatgttttt ... tatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTC
ttagcttatgggtttcttgctttagtttaatggcaatcaatggtctatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCAAATTACAGTATTGGTGGATTGTGAAGGGTTATCTCCATTGAGAATTCC
gtttaat putative branch site (score: 4)
tttagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttttctttttcttgccatcagttcataattaaccagtttcttagcttatgggtttcttgctttagtttaatggcaatcaatggtctatacttcagTATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCAAATTACAGTATTGGTGGATTGTGAAGGGTTATCTCCATTGAGAATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA