Sequence
atgc intronic sequence ATGC exonic sequence...ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttacttttctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
Basic information
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 5
ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttacttttctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
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---gttggtgatatgaatgtcattgcagatatcttgaatggagacagctttgtcaacaaattttgctaattatgcataccct---tattttg----tcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAG
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G114126_T01 (Zea mays), 3'ss of exon 5
ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttacttttctctctctgtgtatataaataa-aatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
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---gtcggtgatacgaatgtcatcgcagattaacttgaacggagacaactttgtcaacaaattttttctaattatgtattttgtactctcatttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTTACTTATGATATCACGTCTAAGGTGAAGACAAAGTTCTTGGGAAATTCAT
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 5
--------ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttacttttctctctctgtgtatataaataaaatattttaaattt-cagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
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gtgcggctatacatctcattgttactc---acatagtggataatgactaattcgcaataagtcatatatttgtttc-atttat---aataagttactgtaatttttcagGTTAGCCATCATCCACCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGACATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTG
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 5
ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttactttt---ctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
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---atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412307|gb|EV282119.1|EV282119EST: AGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAG GTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTT
genomic: AGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttc ... taaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggttttgttacttttctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
tctctctgtgtatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttacttttctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
- - - - - - -tgacttg
- - - - - - - - - - - - - - - cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa