1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgtattttgatatattttctaagttgaaaacccctaaaacaggtgctaaaagcaaataaaggcttacatagctttattttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTATAAAGT
species | Glycine max |
transcript | GLYMA11G14590.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAG ATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTEST: gi|7146932|gb|AW508854.1|AW508854
genomic: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGgtattgtatt ... tttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTT
EST: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAG ATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTEST: gi|5342446|gb|AI794730.1|AI794730
genomic: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGgtattgtatt ... tttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTT
EST: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAG ATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTEST: gi|192331131|gb|FK020351.1|FK020351
genomic: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGgtattgtatt ... tttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTT
EST: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAG ATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTT
genomic: GGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGgtattgtatt ... tttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTT
cctaaaacaggtgctaaaagcaaataaaggcttacatagctttattttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTATAAAGT
ctttatttt CT-rich tract
taaaagcaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtattttgatatattttctaagttgaaaacccctaaaacaggtgctaaaagcaaataaaggcttacatagctttattttgtggcagATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTATAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA