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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacaatatatggttgcattagttgatatgtatatgtttgactctctctggaattttcttaatgtcttataattttcttttgttctttcaattatatacccctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA

Basic information

species Glycine max
transcript GLYMA11G14530.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14530.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 4
gtatggacaatatatggttgcattagttgatatgtatatgtttgactctctctggaattttcttaatgtcttataattttcttttgttctt-tcaattatatacccctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA
             ||| |||||  |||| ||    | |  | | |  ||   || | | |   | || |    | |||     | |   |  | || | | |       |  |||| || |||||||||||||  || || |||||  | |||||| | |||||||||||| |  ||||||| ||||| || ||||||||||| || |||||||
---------gcccatgcttgca--agttcat---caaagttctaatcctaattgaactgtgactgatttgagttcattggggatggcaataataaaatgtttctaatcatgcagGCAATAGAAGTTGTTGATCCAGACCAAAAGATTAAAATGGTTGAGGAGCTTGATGGTCATATCATGCGATGTGTGCGTGATCAGAATGGAAACCATGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242603|gb|GE038801.1|GE038801
EST:     CCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT
genomic: CCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaa ... ccctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttaatgtcttataattttcttttgttctttcaattatatacccctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA
  tcttaat  putative branch site (score: 3)
                                          tacccctcttt  putative PPT
          tcttataattttcttt  TA-rich tract