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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcattactcttcaattaattattttctttcatgaatcttgcatgagcaatagttgataatgctgtagttgtatattgcagTTTTTTGAGCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA

Basic information

species Glycine max
transcript GLYMA11G14500.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14500.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------gtaatcattactcttcaattaattattttctttcatg---aatcttgcatgagcaatagttgataatgctgtagttgtatattgcagTTTTTTGAGCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
                                               ||     |  ||   ||  | |||||| |  ||  |    ||| ||  |||        ||   ||  ||||  || ||  || |||||||||||||||||||| | |||||| ||||||||| | ||   ||| |||  ||| ||||| ||||||||||||||||||||||||||||| || || |
gtatgaaattctcttttcgttgcatgattcttgcatgcgcgctatatgtgtgtgtatctgcacacattattattattattattatataattttaaatggttttacatttgcaa--ctgt--ttctaattttcagTTTTTTGAGCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcatgaatcttgcatgagcaatagttgataatgctgtagttgtatattgcagTTTTTTGAGCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
                         agttgat  putative branch site (score: 5)
                                          ttgtatatt  TA-rich tract