1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtgtttctatttcagtttattttccaaccccttttcatttcatatatgtttctggagatgtaaaatcagattaaaaacgtatattgtttcttttaatttgttttgtaattacagGTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA
species | Glycine max |
transcript | GLYMA11G14040.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGGACGCCAAGTTTATTTGG GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTEST: gi|17023082|gb|BM094116.1|BM094116
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: GAAAAGGACGCCAAGTTTATTTGG GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTEST: gi|24205644|gb|BU964897.1|BU964897
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: GAAAAGGACGCCAAGTTTATTTGG GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTEST: gi|24206010|gb|BU965263.1|BU965263
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: AAGTTTATTTGG GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACT
genomic: AAGTTTATTTGG
gtaaaatcagattaaaaacgtatattgtttcttttaatttgttttgtaattacagGTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA
ttttaat putative branch site (score: 3)
attaaaaacgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttctatttcagtttattttccaaccccttttcatttcatatatgtttctggagatgtaaaatcagattaaaaacgtatattgtttcttttaatttgttttgtaattacagGTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG