1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcctttttttctacaaaagaatacagagggctatttttcaactctattgtttatatatatatatatataacctgttccttcccttctttttgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTGCGTTTATCACCTTAAGGAAAATTGAAGCGGCAAGGGAAATCGCTCACA
species | Glycine max |
transcript | GLYMA11G11670.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|21677297|gb|BQ629648.1|BQ629648
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: GAAAAAGCTGACCAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|192299408|gb|FG992526.1|FG992526
genomic: GAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|192301953|gb|FG995571.1|FG995571
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCGG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|192327782|gb|FK022397.1|FK022397
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|15287791|gb|BI471682.1|BI471682
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|209728795|gb|BW666832.1|BW666832
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|12688335|gb|BG154671.1|BG154671
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|23735502|gb|BU766034.1|BU766034
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTEST: gi|21256250|gb|BQ453138.1|BQ453138
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: AGAAGTGCTGTTATTAGAGCTCAG GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: AGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
attgtttatatatatatatatataacctgttccttcccttctttttgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTGCGTTTATCACCTTAAGGAAAATTGAAGCGGCAAGGGAAATCGCTCACA
ttttgac putative branch site (score: 3)
taacctgttccttccc CT-rich tract
ttatatatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctttttttctacaaaagaatacagagggctatttttcaactctattgtttatatatatatatatataacctgttccttcccttctttttgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCTGCGTTTATCACCTTAAGGAAAATTGAAGCGGCAAGGGAAATCGCTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC