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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttgctatttgcaactacttcctttgaatatacaattaattgcttttgtgtcgtttttttatttcactgttttgacttttagcctttgtttgttggtcacactatgggcatgcatgatgttacttttgataggttagtgatctaatttaatgtattttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG

Basic information

species Glycine max
transcript GLYMA11G11510.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11510.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 3'ss of exon 6
gtgcttgctatttgcaactacttcctttgaatatacaattaattgcttttgtgtcgtttttttatttcactgttttgacttttagcctttgtttgttgg-tcacactatgggcatgcatgatgttacttttgataggttagtgatctaatttaatgtattttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG
        |||||   | || | ||||    | |    | |  || | |||||     |      || | ||  |   | ||  || | | |   |||| |   | |     ||       ||     ||  || ||        || ||||  |   || | ||||||| ||||||||||||||||| || || |||||   ||||||||||||||||||||||||||| |||
-------gtatttttga-tattgcctt---gtgtgatttaagatgatcttgtgagtactacactgtttattgcatcatccttgtgcttgtatcccttggattgtattgcaatcac------tgcccaattaaatgggc-------ctgatttcctactttctttgaagGGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589435|gb|AW705209.1|AW705209
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAT                         GGTGAGGAACTGA-AAAGCTTA
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTA
EST: gi|8401737|gb|BE057371.1|BE057371
EST:     ACCAGAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: ACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|298197330|gb|HO044809.1|HO044809
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTG
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTG
EST: gi|6847035|gb|AW349325.1|AW349325
EST:     AGCAGTTCTTTCAAGANCATNNNGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|16996922|gb|BM086294.1|BM086294
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|193681399|gb|FK623261.1|FK623261
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|5760314|gb|AI965741.1|AI965741
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|151394170|gb|EV264041.1|EV264041
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|19346953|gb|BM891833.1|BM891833
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|298177328|gb|HO027109.1|HO027109
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|193599687|gb|FK551538.1|FK551538
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTAC
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTAC
EST: gi|26058249|gb|CA801163.1|CA801163
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|193642127|gb|FK589733.1|FK589733
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|298178107|gb|HO027490.1|HO027490
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|193350327|gb|FK315329.1|FK315329
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|4293505|gb|AI442057.1|AI442057
EST:     AGCAGTTCTTTCAAGACCATTCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATT
EST: gi|192329017|gb|FK021091.1|FK021091
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|192297529|gb|FG989535.1|FG989535
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|7589250|gb|AW705028.1|AW705028
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAA                         GGTGAGGGACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|208324913|gb|GE124839.1|GE124839
EST:     GCTAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: GC-AGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|192329018|gb|FK021092.1|FK021092
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
EST: gi|208070780|gb|GD870127.1|GD870127
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcatgatgttacttttgataggttagtgatctaatttaatgtattttgtgaagGGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG
                            tgatctaatttaatgt  TA-rich tract