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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaatgcttttccaaaatatgatgtgcaactttgtatatgaaattctaaatttgttctctgttctgtgttactataaaatatcctattggactatattcaaataatgccctgaccaagttattgcttttgctgtgctccagCGCCAACAATTATTATTGCGCATGAGTTCTTCGATGCCCTACCAGTCCATCAGTTTCAG

Basic information

species Glycine max
transcript GLYMA11G10540.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10540.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G498418_T01 (Zea mays), 3'ss of exon 3
gtgtgtaatgcttttccaaaatatgatgtgcaactttgtatatgaaattctaaatttgttctctgttctgtgttact-ataaaatatcctattggactatattcaaataatgccctgaccaagttattgcttttgctgtgctccagCGCCAACAATTATTATTGCGCATGAGTTCTTCGATGCCCTACCAGTCCATCAGTTTCAG
                                   |||  | |    |   || |||||| ||| |||  | ||  | ||             ||       |   ||  | | |     |  ||  |   | |  | || | |||||||||| || || || |||||||| ||||  |||||| ||||| ||||||||||||||
-----------------------------------ttgccttt----tgtcaactttgtt-tcttttcaatcttcttgatggggggggaggggggggggggcttttatgtttctc-----atatttgtaactatcttatg-tgcagCGCCAACCATAATCATAGCGCATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggactatattcaaataatgccctgaccaagttattgcttttgctgtgctccagCGCCAACAATTATTATTGCGCATGAGTTCTTCGATGCCCTACCAGTCCATCAGTTTCAG
                     ccctgac  putative branch site (score: 3)
                                      cttttgct  putative PPT
      tatattcaaataat  TA-rich tract