Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaattatcatcttatttcaatcatgagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT

Basic information

species Glycine max
transcript GLYMA11G09790.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016117|gb|CX702859.1|CX702859
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|23729125|gb|BU762647.1|BU762647
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|192303487|gb|FG995921.1|FG995921
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTCCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|192334432|gb|FK024447.1|FK024447
EST:     GCTGGATACTTTTCAATAGGACTAGGAACTTCATCCTTTTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTTTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|31475648|gb|CD417676.1|CD417676
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTCTTGAGTGTCTGACCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|58015262|gb|CX702004.1|CX702004
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|18713219|gb|BM522711.1|BM522711
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|14259783|gb|BG882691.1|BG882691
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|20812647|gb|BQ297125.1|BQ297125
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|31459239|gb|CD401267.1|CD401267
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|12771983|gb|BG236910.1|BG236910
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|31469780|gb|CD411808.1|CD411808
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGTATGTGTTGAGTGTTTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|31307040|gb|CD392243.1|CD392243
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|193526057|gb|FK483200.1|FK483200
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|151406832|gb|EV276647.1|EV276647
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|58014737|gb|CX701479.1|CX701479
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: gi|21479719|gb|BQ576402.1|BQ576402
EST:     GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT
                                        ttttctccact  CT-rich tract
              tttatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgaattatcatcttatttcaatcatgagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC