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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagaaaattgtatcagatattgtgcctttagtactatgcagtttgttatccatgtcttaacccttacttcattcttgctgtttgtgatatcctacaccagGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAG

Basic information

species Glycine max
transcript GLYMA11G09370.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09370.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 5
cagaaaattgtatcagatattgtgcctttagtactatgcagtttgttatcca--tgtcttaacccttacttcattcttgctgtttgtgatatc--ctacaccagGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAG
     |  |  | |   | ||     |||    ||||    ||| || |  |      |      || | | ||  |     ||| | || |    | |  ||||||||||| ||||||||||| ||||||| ||  || |||||||| | ||| |||||| |||| |   ||||||| || ||| |||||||||||
----tagctacaacttttgttaccagtttgtgtctatttgctttcttgtgtaatcaattctgtggttgcataatgttaatgttttcttattttattttcttcagGCACTTCTGGATTATGAAAGGCATAAAACACGTGGCGGTGAGCTCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208174528|gb|GD969973.1|GD969973
EST:     GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG                         GCACTTCTTGATTATGAAAGACATAAAATACAAGGTG
genomic: GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGgtgattctac ... cctacaccagGCACTTCTTGATTATGAAAGACATAAAATACAAGGTG
EST: gi|208124142|gb|GD921978.1|GD921978
EST:     GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG                         GCACTTCTTGATTA
genomic: GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGgtgattctac ... cctacaccagGCACTTCTTGATTA
EST: gi|7042403|gb|AW472297.1|AW472297
EST:     TTTATGAGAAG                         GCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTG
genomic: TTTATGAGAAGgtgattctac ... cctacaccagGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTG