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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatactttggatatcaaatgctgatctattattgcttttttttcttcctcctacaattccacattactaatactttctgctttatatttttggtttgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCATGACGGGGGAG

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207846669|gb|GD819994.1|GD819994
EST:     TCCTGGAATTTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: TCCTGGAA-TTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|13791595|gb|BG654186.1|BG654186
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|207846938|gb|GD819479.1|GD819479
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaattccacattactaatactttctgctttatatttttggtttgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCATGACGGGGGAG
              tactaat  putative branch site (score: 1)
                                           tttgttcttt  putative PPT
                              tttatatttttggttt  TA-rich tract