1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggttattatttaagattcttcaggtgaatttaggtaggtcatcgatccatcatgggtgtcatttcggcttaataactctttactttatttctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATAATAAT
species | Glycine max |
transcript | GLYMA11G07810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|15664873|gb|BI702244.1|BI702244
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|6566190|gb|AW233826.1|AW233826
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|14516420|gb|BI095092.1|BI095092
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|6725714|gb|AW310113.1|AW310113
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|254317299|gb|GR826244.1|GR826244
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|254317300|gb|GR826245.1|GR826245
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|16343412|gb|BI969007.1|BI969007
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGAEST: gi|151393796|gb|EV263671.1|EV263671
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
EST: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAG CAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
genomic: GTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaattt ... tctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGA
atccatcatgggtgtcatttcggcttaataactctttactttatttctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATAATAAT
taataac putative branch site (score: 1)
ctctttactttatttc CT-rich tract
ttaataactctttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttattatttaagattcttcaggtgaatttaggtaggtcatcgatccatcatgggtgtcatttcggcttaataactctttactttatttctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATAATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG