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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttgtcattcattgaattgttcctccatgtattttctgcttctgccatctctctcccgattactctgatgaaaactggtcgtagtgtaagctttcgtccagctgtttcccatttgctttgtgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA

Basic information

species Glycine max
transcript GLYMA11G05760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatttttgtcattcattgaattgttcctccatgtattttctgcttctgccatctctctcccgattactctgatgaaaactggtcgtagtgtaagctttcgtccagctgtttcccatttgctttgtgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA-----------------------------------------------------------------------------------------------
                                                                          || |||||||||| |||||| | |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||                                                                                                
-------------------------------------------------------------------------aataaaaactggtcatagtgtgaactttggtccagctgtttcccatttgttttgttctggctttacagagatatgaaacaacatcaaacatcttatacagGCAAGATATGAAATTCTTAATAAGGGAGAGAAGTCTGTGGTGGGCTCTAAGAATGGGGTGATCGAAGACATTTCACAAACTTTGACTTCTTATCTTGATA