1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactgtgctttcatactctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATGGCTGTGGTCGAAGCTCAAGCTATGATTTCTGTTGGTCGTAAGGAAATAG
species | Glycine max |
transcript | GLYMA11G05560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAEST: gi|208111462|gb|GD909180.1|GD909180
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACA
EST: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATGEST: gi|151397172|gb|EV267045.1|EV267045
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
EST: TGAGAGATATTGAGATACTGTGCCAGACCCCTGAGATAGAACACTCACCG ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
cggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATGGCTGTGGTCGAAGCTCAAGCTATGATTTCTGTTGGTCGTAAGGAAATAG
atttgat putative branch site (score: 5)
ttactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgctttcatactctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATGGCTGTGGTCGAAGCTCAAGCTATGATTTCTGTTGGTCGTAAGGAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA