Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacctatcacttttattttgattgtcttggagccataacagagtatactaactgcttaagaattacattttctccttccattgtctattcttctgtgtttatattactttagtactgaaaagtgctttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT

Basic information

species Glycine max
transcript GLYMA11G05080.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05080.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g10370.1 (Oryza sativa), 3'ss of exon 4
gtaagacctatcacttttattttgattgtcttggagccataacagagtatactaactgcttaagaattacattttctccttccattgtctattcttctgtgtttat--attactttagtactgaaaagtgctttctggtgt-gcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                                                || ||||   |   ||   |  | |   |    | |  |||   |  |   |      || ||||  | | ||   | ||||||   | ||| |||| |||||| | |||||    ||||||||||| || ||||| |||||||| ||||| |||||||| || |||||||| || ||||| 
--------------------------------------------------------------gtaagtacacgctaagctattacagaccgataaggttttcttacgcacaaacctgtgttcgacaagttatatgtgacattgcagGGGGCTAAAGACAATCACTGACCGAGAAGTGGCATGCTTCATGATATCATGCAAGAACTCGACAAACATTGACTCTGTCATCGACTGGCTCGTGAAGCAC

upper sequence: GLYMA11G05080.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G007188_T01 (Zea mays), 3'ss of exon 4
gtaagacctatcacttttattttgattgtcttggagccataacagagtatactaactgcttaagaattacattttctccttccattgtctattcttctgtgtttatattactttagtac-tgaaaagtgctttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                  |     |      || ||  |||     |  |||    |||  |     | | ||   ||  |     || || |  | || ||| ||   | || | |      |||||||   | ||| | || |||||| | |||||    ||||||||||  || ||||| |||||||||||||| || ||||| ||||||||||| || ||| | 
---------------------------------aaatatcagttcgatacacacactctgctatgatt----ttttcctgaaaaatatcagctcgac-acaattgtactcatctactacatggtgaatgttat------tgcagGGGCCTAAAGACGATCACTGACCGAGAAGTGGCATGCTTCATGACATCATGCAAGAACTCGACCAACATTGATTCTGTCATTGACTGGCTGGTGAAGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574760|gb|CX547735.1|CX547735
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|31464936|gb|CD406964.1|CD406964
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151410326|gb|EV280141.1|EV280141
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|16349420|gb|BI975015.1|BI975015
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|58023255|gb|CX709996.1|CX709996
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|254344316|gb|GR851119.1|GR851119
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAAGTTTGCTGCTTCATGATCTCGT
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAA-GTTTGCTGCTTCATGATCTCGT
EST: gi|58016934|gb|CX703676.1|CX703676
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|120492024|gb|EH220191.1|EH220191
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151412616|gb|EV282428.1|EV282428
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|254344317|gb|GR851120.1|GR851120
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208065972|gb|GD865197.1|GD865197
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|192323170|gb|FK017396.1|FK017396
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAC                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|209716494|gb|BW676944.1|BW676944
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|254335359|gb|GR846856.1|GR846856
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|58022559|gb|CX709300.1|CX709300
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|57574961|gb|CX547936.1|CX547936
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|21600971|gb|BQ611302.1|BQ611302
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208169443|gb|GD971856.1|GD971856
EST:     AGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|120491696|gb|EH219863.1|EH219863
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|192307680|gb|FK001624.1|FK001624
EST:     AAGATTGACAAAGCGGGGGCTCTGTTTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATTTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|298177019|gb|HO023380.1|HO023380
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|193390616|gb|FK354492.1|FK354492
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151395085|gb|EV264956.1|EV264956
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151401783|gb|EV271596.1|EV271596
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|254335360|gb|GR846857.1|GR846857
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|27423658|gb|CA935178.1|CA935178
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|120491652|gb|EH219819.1|EH219819
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|7686316|gb|AW756892.1|AW756892
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|58023508|gb|CX710249.1|CX710249
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|10235042|gb|BE803930.1|BE803930
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACACGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|193344386|gb|FK311138.1|FK311138
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGAC
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGAC
EST: gi|192301117|gb|FG988012.1|FG988012
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|214007707|gb|DB986073.1|DB986073
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|58022262|gb|CX709003.1|CX709003
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151394399|gb|EV264270.1|EV264270
EST:     GGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCACGATCTCGTG
genomic: GGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|120491738|gb|EH219905.1|EH219905
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151409006|gb|EV278814.1|EV278814
EST:     AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAAGCGGGGGCTCTGTCTAAACAAGCATTGACTGACCAAATgtaagaccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattcttctgtgtttatattactttagtactgaaaagtgctttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                      tgctttct  CT-rich tract
             tttatattactttagt  TA-rich tract