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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaacattttcatgttcaaggttaaatctattgaaggttatccatcccccattcattttgtttatttatttattaacatgtttttcagGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTG

Basic information

species Glycine max
transcript GLYMA11G04600.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04600.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 9
gtttgaacattttcatgttcaaggttaaatctattgaaggttatccatcccccattcattttgtttatttatttattaacatgtttttcagGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTG
||||| | |||  ||| || || | ||    |||| ||| |  | ||                   |||   ||||| ||    | ||||||| |||||||| ||||| || || |||||||| || || |||||| |||| ||||| || ||||| || || || ||||||||||||  ||| ||||| |
gtttgta-attcacattttaaatgatatga-tattcaagatcgtgca-------------------attatcttattgacccaatcttcagGTCAAGAGTGTATTTGGCGCAAAAATGTTTGCTCTTGGAGTTGTTATTAAGATTCCAGTACCAAAGCAGACAGCAAAAACGAGTTTCCAAGTTACATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335335|gb|CO979201.1|CO979201
EST:     TGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAG                         GTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAA
genomic: TGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGgtttgaacat ... tgtttttcagGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggttatccatcccccattcattttgtttatttatttattaacatgtttttcagGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTG
                                     tattaac  putative branch site (score: 1)
                                             tgtttttc  CT-rich tract
                 attcattttgtttatt  TA-rich tract