Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctcttgcttctaacttaccatgtattttgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG

Basic information

species Glycine max
transcript GLYMA11G04330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------------tccctctctttcgtggaagt--aactgagatccttatatatgg----ttctaatatttctcttgcttctaacttac-catgtattttgttatccaacatttgtac-----------agGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG
                                                                        |  | |  ||||    |  |  || |    | ||| ||| |||    | || | || |   ||  || |   ||||    | ||  | |  ||  |||||| | |           ||||  | || || || ||||| || ||||| ||||||||||| || || || || ||||| || ||||||||||||||||| ||||| ||||| |  || |
gtgtgcttaggaaaatataaatttcttgcatatcctttgtattacatcaggagattagcacgcgtgtagatctggcacattttcagaaagttcaaaatcgtgttcttttatttgggagatgctgaaatctgaattatttatgggttacatggggataatttgttctgacattttttctcatgctgatcagGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
--------------------------------------------------------------------------------------------tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctcttgcttctaacttaccatgtattt-tgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG
                                                                                                | |  || ||  |      |    ||    | | |   | |  ||| | ||    | |||  ||    ||   |        | ||| | ||  ||||| || || || ||||||||||| ||||| ||||||||||| || || || || || ||||| ||||||||||||||||| ||||| | |||    ||||
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtt-tatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G075719_T02 (Zea mays), 3'ss of exon 5
-tccctctctttcgtggaagtaactgagatccttatatatggttcta-atatttctcttgcttctaacttaccatgtattttgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG
 | ||| |  || | | | |  ||    ||  || |  |||  | ||  | ||| | |  |  |  | ||     || ||    |  ||||| | ||  ||||| || || || ||||||||||| || || ||||| ||||| ||||| || || || || || ||||||||||||||||| ||||| | ||||   ||||
atgccttttcttagggaagg--acctttatttttctgcatgtctgtatgtctttatatgtcaacatatttttttcgttttgcactgaccaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCCCTTCCTGGTATGGAGACACTCTCATCAGCGAAGCAGGAAGACATGGTTGATGTGAACTTGAGGTCTGGCAATG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 5
---tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctcttgcttctaacttaccatgtattttgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG
   |     | ||| ||         | |     |  |  |||| | |||  ||||| |       ||  ||      ||  ||  |   ||  ||| |  |||| |||||||| |||||||| |||||  |||| |||||||||||||| ||||| ||||| ||||||||||||||||| || ||  | |||||||  ||  
atttttgaatattttgttatttggcttcattcagtcctgcatggct-taacttttctttcttagacaaactattgaccatcctg--aatgaatctttttctagGCGCTATTTCGGAAAATTGCAGCAGCCTTACCAGGAATGGAAACACTTTCTTCAGCAAAGCAAGAAGACATGGTTGACGTCAATCTTAAGTCTAGCAACA

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S456_9V6.1 (Physcomitrella patens), 3'ss of exon 6
tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctctt----gcttctaacttaccatgtattttgttatccaacat-ttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG---
      |   |  ||  | | | | || |  |  ||   | |  | |||| |  |||      | | | | ||||||  |  |  |     |  || | || ||||| || ||||||||||||||||||||| ||||||| |||||  |  | || ||| || ||   || ||  | |||||||| ||  | ||| | ||||      
---gcatacgttttgatacttatt-aggttttcgta-gcgctcattatatatagctttaaaagtgcaaccataccatacagctcatataatactatatcgtgcagGCACTGTTTCGAAAAATTGCTGCAGCATTACCTGGTATGGAGGCTTTGTCATCT-CACAA--GGATGATCTTGTTGATGTCAATCTCAAGCCAACAACAAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321711|gb|FK013159.1|FK013159
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAGTGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|7925544|gb|AW831570.1|AW831570
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254335666|gb|GR847194.1|GR847194
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|193385769|gb|FK350319.1|FK350319
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGGATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|7589497|gb|AW705278.1|AW705278
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|16995877|gb|BM085249.1|BM085249
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAA
EST: gi|21285946|gb|BQ473817.1|BQ473817
EST:     TCAATGTCCTGTTCATTGGAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAA
EST: gi|7326801|gb|AW620599.1|AW620599
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|22521828|gb|BU080639.1|BU080639
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCA
EST: gi|17519308|gb|BM188350.1|BM188350
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|6455258|gb|AW185941.1|AW185941
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|298172883|gb|HO019867.1|HO019867
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|18038975|gb|BM307269.1|BM307269
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAA
EST: gi|15336976|gb|BI497632.1|BI497632
EST:     CAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGGTTTA-TATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: CAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGG-TTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|19345951|gb|BM890831.1|BM890831
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATT
EST: gi|13562826|gb|BG551046.1|BG551046
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGC
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGC
EST: gi|27809327|gb|CB063749.1|CB063749
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGA
EST: gi|15200563|gb|BI424413.1|BI424413
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAAT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAAT
EST: gi|192312364|gb|FK005368.1|FK005368
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|19347258|gb|BM892138.1|BM892138
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|192295843|gb|FG990881.1|FG990881
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAA-TTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254317511|gb|GR826495.1|GR826495
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254318743|gb|GR830307.1|GR830307
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|298164387|gb|HO014032.1|HO014032
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254318742|gb|GR830306.1|GR830306
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|192325398|gb|FK018369.1|FK018369
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|208194430|gb|GD987671.1|GD987671
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|7234439|gb|AW569776.1|AW569776
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|7283618|gb|AW596223.1|AW596223
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254338044|gb|GR849676.1|GR849676
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|193448631|gb|FK413356.1|FK413356
EST:     GGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: GGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|11274538|gb|BF324884.1|BF324884
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAATGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGG
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGG
EST: gi|192321351|gb|FK012112.1|FK012112
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAGTGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254318766|gb|GR830330.1|GR830330
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|192312363|gb|FK005367.1|FK005367
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAA
EST: gi|254335665|gb|GR847193.1|GR847193
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|15000837|gb|BI321651.1|BI321651
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GGCCTATTTCGA
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGA
EST: gi|192300259|gb|FG987836.1|FG987836
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|15664827|gb|BI702198.1|BI702198
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|12489882|gb|BG043403.1|BG043403
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGNAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|208170656|gb|GD967483.1|GD967483
EST:     GTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: GTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254338043|gb|GR849675.1|GR849675
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254344521|gb|GR851218.1|GR851218
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254318765|gb|GR830329.1|GR830329
EST:     CAATGTCATGTTCATTGAAACTAGTGCTAAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: CAATGTCATGTTCATTGAAACTAGTGCTAA-GGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|23728735|gb|BU762427.1|BU762427
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|12690087|gb|BG156423.1|BG156423
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCCAAAAATGGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254317510|gb|GR826494.1|GR826494
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254331479|gb|GR843436.1|GR843436
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|23053072|gb|BU577563.1|BU577563
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
EST: gi|254344522|gb|GR851219.1|GR851219
EST:     TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaaaccttg ... atttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttctcttgcttctaacttaccatgtattttgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG
                          atgtattttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctcttgcttctaacttaccatgtattttgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
-ccctctc
- - - - - - - - - gtaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta