1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcagtatttcaacagaagaaattttttccacatcttccttctattgggtttggagagggggattttacatctctggcatgtgatacttttcccccacagGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCAC
species | Glycine max |
transcript | GLYMA11G02070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCTTGTAGGCTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAG GTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGEST: gi|151395175|gb|EV265046.1|EV265046
genomic: GCTTCCTTGTAGGCTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAGgtaactcaat ... tcccccacagGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTG
EST: GCTTCCTTGTAGGCTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAG -TTTGGGAATTTGA
genomic: GCTTCCTTGTAGGCTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAGgtaactcaat ... tcccccacagGTTTGGGAATTTGA
tgggtttggagagggggattttacatctctggcatgtgatacttttcccccacagGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCAC
tacttttcccccac CT-rich tract
attttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtatttcaacagaagaaattttttccacatcttccttctattgggtttggagagggggattttacatctctggcatgtgatacttttcccccacagGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - agaagaaa
- - - - - - - - - - - - - - ccacatc
- - - - - - - - - - - - - - - - - - -ccttcta
- - - - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtg