1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtttagttttgtgttgttgattatgttatattttgtgataggtatatggccttgtttagttttgtgttgtggttgattatttgttatattttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTG
species | Glycine max |
transcript | GLYMA11G01960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTG GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTEST: gi|192305249|gb|FG997529.1|FG997529
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: AGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTG GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
tatggccttgtttagttttgtgttgtggttgattatttgttatattttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTG
ggttgat putative branch site (score: 5)
ttgattatttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttagttttgtgttgttgattatgttatattttgtgataggtatatggccttgtttagttttgtgttgtggttgattatttgttatattttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -ttttgtg
- - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg