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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacatcaaattcactttcatatatctgtttgtgtgtgtgttattccaaacaaaatttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG

Basic information

species Glycine max
transcript GLYMA11G01380.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01380.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 4
----------------------------gtataacatcaaa--ttcactttcatatatctgtttgtgtgtgtgttattccaaacaaaatttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG
                             |    || |||   ||  |||    |      |||||     ||||  || || |  | | ||   |  |   |      ||| ||| | || || |||||||| |||||||| ||||||||  | ||||||||||| ||||| |||||| ||
gtttacatatatgtataaataatttattatgaggcagcaagtgtttgcttctgcactgacatttgttgccttgttgctctaa-cttactgtgtggtaatctgt------ctttcagGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATG

upper sequence: GLYMA11G01380.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G03120.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataacatcaaattcactttcatatatctgtttgtgtgtgtgttattccaaacaaaatttgaa--ttggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG
   || | |  ||   | || || | | || |  ||     |  | |    |       |  ||  |  | | || |||| ||| |||   |||||||  |||||||| |||||||| ||||||||  | |||||||| |||||||||||| ||
--gtaccttagaaa--atttgcacaaaactttgggtcaaattagtttctgcagtgtttctataacctctgcttattgatttctt-cagGATATCATAAGGGACCCATTCATGCTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057972|gb|AI736448.1|AI736448
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCATGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCA
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCA
EST: gi|298199192|gb|HO042555.1|HO042555
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|298170232|gb|HO018856.1|HO018856
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGG
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGG
EST: gi|298188565|gb|HO035258.1|HO035258
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTACGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|298172316|gb|HO019356.1|HO019356
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|298185092|gb|HO030305.1|HO030305
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|192296463|gb|FG989828.1|FG989828
EST:     TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTCATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGGAATTTCAGgtataacatc ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgtgtgtgttattccaaacaaaatttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG
                   aaacaaaatttgaatt  TA-rich tract