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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgcaactttctttgtaaatgatttgaaattgtttttaatgtatgtctaacttaattcttctattgtttaaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAGTGACAAAAGGCCAGAATCTGTGTAAATCAGATTACTAATTTAACTAAGT

Basic information

species Glycine max
transcript GLYMA11G01300.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208153822|gb|GD954791.1|GD954791
EST:     AGAGTAAGTAGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAG                         AATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG
genomic: AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGgtcgcaactt ... taaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG
EST: gi|208290546|gb|GE087608.1|GE087608
EST:     AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAG                         AATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTG
genomic: AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGgtcgcaactt ... taaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTG
EST: gi|6725839|gb|AW310238.1|AW310238
EST:     AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAG                         AATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG
genomic: AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGgtcgcaactt ... taaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG
EST: gi|207740117|gb|GD714727.1|GD714727
EST:     AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAG                         AATCACATTCAAAAGAAACCGAAATTGCCAAG
genomic: AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGgtcgcaactt ... taaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAG
EST: gi|6566353|gb|AW234022.1|AW234022
EST:     AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAG                         AATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG
genomic: AGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGgtcgcaactt ... taaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaattgtttttaatgtatgtctaacttaattcttctattgtttaaatgacagAATCACATTCAAAAGAAACCGAAATTGCCAAGGAAAGGCGTGCTGCACAAGTGACAAAAGGCCAGAATCTGTGTAAATCAGATTACTAATTTAACTAAGT
                                ttcttctattgttt  CT-rich tract
                            ttaattcttctattgt  TA-rich tract