1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctatttgcatatctttgaattcatgttgagagatgctgttagaacacagtagtgatgtgtcttgtgtggtcttataaaggtgaaaaatgttgacttgcagGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTAT
species | Glycine max |
transcript | GLYMA11G00680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGG GCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGEST: gi|213617353|gb|DB978979.1|DB978979
genomic: CCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGgtgagttttc ... tgacttgcagGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGG
EST: AATCTGGCATTAAACTTGATCAGCAAAGG GCTTCAGAGCTCTCTATGGCTTCAGTATAAACGCA-ATCATATTGCTGCTG
genomic: AATCTGGCATTAAACTTGATCAGCAAAGGgtgagttttc ... tgacttgcagGCTTCAGAGCTCTCTATGGCTTCAGTATAAAC-CACATCATATTGCTGCTG
acagtagtgatgtgtcttgtgtggtcttataaaggtgaaaaatgttgacttgcagGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTAT
tgttgac putative branch site (score: 3)
tcttataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttgcatatctttgaattcatgttgagagatgctgttagaacacagtagtgatgtgtcttgtgtggtcttataaaggtgaaaaatgttgacttgcagGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -tgcatat
- - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat