Sequence
atgc intronic sequence ATGC exonic sequencegtattatggcttgtctattaaattgcttctattatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
Basic information
species | Glycine max |
transcript | GLYMA10G43430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G50410.1 (Arabidopsis thaliana), 3'ss of exon 4
gtattatggcttgtctattaaattgcttctattatttctgttctgggccatttatttgttatcact-ttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
||||| || || | | ||| | ||| | | || | | | | ||| |||| |||| | |||||||||||||||||| |||||| ||||||||||||| || |||||||| || |||| ||||| || |||||||| |||
gtattcaggtttacatcat------ctttcagtatctgtcagaatggtcttgtgtac-ttaacactgttgtttctcagAAAATTGCATTGGCATGGATGTTTCAGAAGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG
upper sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G20010.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattatggcttgtctattaaattgcttctattatttct--gttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
| | || ||| | | | || | | |||| | || ||| | |||| || || || ||||||||||||| ||||| |||||| ||||||||||||| | ||||| | || || ||||| | || ||||| |||
--gtagtagcatgttt-taagtttccatttattggccgttggtattggtttgtgtattaagtactac--tggtcttcagAAAATTGCGTTGGCATGGATGTTTCAGAAGGAAACAAGTAGTTTCAACTGTCCAGGAGGGATACTAGCAGATGATCAG
upper sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------gtattatggcttgtctattaaattgcttctattatttctgttctgggccatttatttgttatc-----------actttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
|| | | || | | | || ||| || || || | | || ||| | | | ||||| | ||||||||||||||||| ||||||| |||||||||||| | ||||| ||||| ||||| |||||| | |||||||| |||
gttgtttttttttttgttttttttctatttttttattttttttctgcatctactttagttgactttggtttgtatgtgaattacttggtttgagatactgtaattatacttcgaattgtgtgtgaaatacttggttttgaccctaaggtattttgtcgtacagAAAATTGCATTGGCATGGATGCATCAGAAGGAAACAAGAAGTTTACATTGTTTGGGCGGGATTCTAGCTGATGATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcttctattatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
tcacttt CT-rich tract
atttatttgttatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattatggcttgtctattaaattgcttctattatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT